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Article Dans Une Revue GigaScience Année : 2015

The ocean sampling day consortium

Anna Kopf (1, 2) , Mesude Bicak (3) , Renzo Kottmann (1) , Julia Schnetzer (1, 2) , Ivaylo Kostadinov (2) , Katja Lehmann (4) , Antonio Fernandez-Guerra (1, 3) , Christian Jeanthon (5) , Eyal Rahav (6) , Matthias Ullrich (2) , Antje Wichels (7) , Gunnar Gerdts (7) , Paraskevi Polymenakou (8) , Giorgos Kotoulas (8) , Rania Siam (9) , Rehab Z Abdallah (9) , Eva C Sonnenschein (10) , Thierry Cariou (11) , Fergal O'Gara (12, 13) , Stephen Jackson (10) , Sandi Orlic (14) , Michael Steinke (15) , Julia Busch (16) , Bernardo Duarte (17) , Isabel Caçador (17) , João Canning-Clode (18, 17) , Oleksandra Bobrova (19) , Viggó Marteinsson (20) , Eyjolfur Reynisson (20) , Clara Magalhaes Loureiro (21) , Gian Marco Luna (22) , Grazia Marina Quero (22) , Carolin R Löscher (23) , Anke Kremp (24) , Marie E Delorenzo (25) , Lise Ovreas (26) , Jennifer Tolman (27) , Julie Laroche (27) , Antonella Penna (28) , Marc Frischer (29) , Timothy Davis (25) , Katherine Barker (30) , Christopher P. Meyer (30) , Sandra Ramos (31) , Catarina Magalhaes (31) , Florence Jude-Lemeilleur (32) , Ma Leopoldina Aguirre-Macedo (33) , Shiao Wang (34) , Nicole Poulton (35) , Scott Jones (36) , Rachel Collin (37) , Jed A Fuhrman (38) , Pascal Conan (39) , Cecilia Alonso (40) , Noga Stambler (41, 42) , Kelly Goodwin (25) , Michael M Yakimov (43) , Federico Baltar (44) , Levente Bodrossy (45) , Jodie van de Kamp (45) , Dion Mf Frampton (45) , Martin Otrowski (46) , Paul van Ruth (47) , Paul Malthouse (47) , Simon Claus (48) , Klaas Deneudt (48) , Jonas Mortelmans (48) , Sophie Pitois (49) , David Wallom (3) , Ian Salter (7, 39) , Rodrigo Costa (50) , Declan C. Schroeder (51) , Mahrous M Kandil (52) , Valentina Amaral (40) , Florencia Biancalana (53) , Rafael Santana (40) , Maria-Luiza Pedrotti (54) , Takashi Yoshida (55) , Hiroyuki Ogata (55) , Tim Ingleton (56, 57) , Kate Munnik (58) , Naiara Rodriguez-Ezpeleta (59) , Veronique Berteaux-Lecellier (60) , Patricia Wecker (60) , Ibon Cancio (61) , Daniel Vaulot (11) , Christina Bienhold (1, 7) , Hassan Ghazal (62) , Bouchra Chaouni (63, 62) , Soumya Essayeh (62) , Sara Ettamimi (64, 62) , El Houcine Zaid (63) , Nourredine Boukhatem (62) , Abderrahim Bouali (62) , Rajaa Chahboune (65, 62) , Said Barrijal (65) , Mohammed Titinouni (66) , Fatima El Otmani (67) , Mohamed Bennani (66) , Marianna Mea (2) , Nadezhda Todorova (68) , Ventzislav Karamfilov (68) , Petra ten Hoopen (69) , Guy Cochrane (69) , Stéphane L'Haridon (70) , Kemal Can Bizsel (71) , Alessandro Vezzi (72) , Federico M Lauro (73) , Patrick Martin (74) , Rachelle M Jensen (75) , Jamie Hinks (73) , Susan Gebbels (76) , Riccardo Rosselli (72) , Fabio de Pascale (72) , Riccardo Schiavon (72) , Antonina dos Santos (77) , Emilie Villar (78) , Stéphane Pesant (79) , Bruno Cataletto (80) , Francesca Malfatti (80) , Ranjith Edirisinghe (81) , Jorge A Herrera Silveira (82) , Michele Barbier (83) , Valentina Turk (84) , Tinkara Tinta (84) , Wayne J Fuller (85) , Ilkay Salihoglu (85) , Nedime Serakinci (85) , Mahmut Cerkez Ergoren (85) , Eileen Bresnan (86) , Juan Iriberri (61) , Paul Anders Fronth Nyhus (87) , Edvardsen Bente (88) , Hans Erik Karlsen (89) , Peter N Golyshin (90) , Josep M Gasol (91) , Snejana Moncheva (92) , Nina Dzhembekova (92) , Zackary Johnson (93) , Christopher David Sinigalliano (25) , Maribeth Louise Gidley (94, 25) , Adriana Zingone (95) , Roberto Danovaro (96, 95) , George Tsiamis (97) , Melody S. Clark (98) , Ana Cristina Costa (21) , Monia El Bour (99) , Ana M Martins (21) , R. Eric Collins (100) , Anne-Lise Ducluzeau (100) , Jonathan Martinez (101) , Mark J Costello (102) , Linda A Amaral-Zettler (103, 104) , Jack A Gilbert (105, 106, 107, 103) , Neil Davies (108, 2) , Dawn Field (2, 3) , Frank Oliver Glöckner (1, 2)
1 Max Planck Institute for Marine Microbiology
2 Jacobs University = Constructor University [Bremen]
3 University of Oxford
4 Centre for Ecology & Hydrology, Oxfordshire UK
5 AD2M - Adaptation et diversité en milieu marin
6 IOLR - Israel Oceanographic and Limnological Research
7 AWI - Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung = Alfred Wegener Institute for Polar and Marine Research = Institut Alfred-Wegener pour la recherche polaire et marine
8 HCMR - Hellenic Centre for Marine Research
9 American University in Cairo
10 DTU - Danmarks Tekniske Universitet = Technical University of Denmark
11 SBR - Station biologique de Roscoff [Roscoff]
12 UCC - University College Cork
13 Curtin University
14 IRB - Institut Ruđer Bošković
15 University of Essex
16 OFFIS - Carl Von Ossietzky Universität Oldenburg = Carl von Ossietzky University of Oldenburg
17 ULISBOA - Universidade de Lisboa = University of Lisbon
18 Smithonian Environmental Research Center
19 Odessa National I.I.Mechnikov University
20 Matis Ltd
21 Universidade dos Açores
22 ISMAR - Istituto di Science Marine
23 GEOMAR - Helmholtz Centre for Ocean Research [Kiel]
24 SYKE - Finnish Environment Institute
25 NOAA - National Oceanic and Atmospheric Administration
26 UiB - University of Bergen
27 Dalhousie University [Halifax]
28 Università di Urbino
29 Skidaway Institute of Oceanography
30 Smithsonian Institution
31 CIIMAR - Interdisciplinary Centre of Marine and Environmental Research [Matosinhos, Portugal]
32 EPOC - Environnements et Paléoenvironnements OCéaniques
33 CINVESTAV - Centro de Investigacion y de Estudios Avanzados del Instituto Politécnico Nacional
34 Mississippi State University [Mississippi]
35 Bigelow Laboratory for Ocean Sciences
36 Smithsonian Marine Station
37 Smithsonian Tropical Research Institute
38 USC - University of Southern California
39 LOMIC - Laboratoire d'Océanographie Microbienne
40 UDELAR - Universidad de la República [Montevideo]
41 Bar-Ilan University [Israël]
42 The Interuniversity Institute for marine Science in Eilat
43 IAMC-CNR
44 University of Otago [Dunedin, Nouvelle-Zélande]
45 CSIRO - Commonwealth Scientific and Industrial Research Organisation [Canberra]
46 Macquarie University
47 SARDI - South Australian Research and Development Institute [Australia]
48 Flanders Marine Institute
49 CEFAS - Centre for Environment, Fisheries and Aquaculture Science [Weymouth]
50 University of Algarve [Portugal]
51 Marine Biological Association
52 Department of Chemistry
53 Argentine Institute of Oceanography
54 LOV - Laboratoire d'océanographie de Villefranche
55 Kyoto University
56 UTAS - University of Tasmania [Hobart, Australia]
57 Waters, wetlands & coasts Sydney
58 Lwande technologies Cape Town
59 AZTI - AZTI
60 CRIOBE - Centre de recherches insulaires et observatoire de l'environnement
61 UPV / EHU - University of the Basque Country = Euskal Herriko Unibertsitatea
62 Université Mohammed Premier [Oujda]
63 UM5 - Université Mohammed V de Rabat [Agdal]
64 USMBA - Université Sidi Mohamed Ben Abdellah
65 UAE - Université Abdelmalek Essaâdi
66 Institut Pasteur du Maroc
67 Faculty of Sciences, Rabat, Morocco.
68 BAS - Bulgarian Academy of Sciences
69 EMBL-EBI - European Bioinformatics Institute [Hinxton]
70 UBO - Université de Brest
71 DEÜ - Dokuz Eylül Üniversitesi = Dokuz Eylül University [Izmir]
72 Unipd - Università degli Studi di Padova = University of Padua
73 Singapore centre for environmental life sciences engineering
74 Nanyang Technological University [Singapour]
75 Indigo V Expeditions
76 Newcastle University [Newcastle]
77 IPMA - Instituto Português de Investigação do Mar e da Atmosfera
78 IGS - Information génomique et structurale
79 Universität Bremen
80 OGS - Istituto Nazionale di Oceanografia e di Geofisica Sperimentale
81 RUSL - Rajarata University of Sri-Lanka
82 USM - University of Southern Mississippi
83 Mediterranean Science Commission
84 National institute of biology Fornace
85 Near East University
86 Marine Scotland Marine Laboratory
87 Kind of Blue Project ABS
88 UiO - University of Oslo
89 Marine biology research station
90 Bangor University
91 ICM - Institute of Marine Sciences / Institut de Ciències del Mar [Barcelona]
92 Fridtjof Nansen Institute of oceanology
93 Duke University [Durham]
94 Miami University
95 SZN - Stazione Zoologica Anton Dohrn
96 Polytechnic University of Marche
97 University of Patras
98 BAS - British Antarctic Survey
99 INSTIM
100 UAF - University of Alaska [Fairbanks]
101 University of Hawaii
102 University of Auckland [Auckland]
103 MBL - Marine Biological Laboratory
104 Brown University
105 Zhejiang University
106 ANL - Argonne National Laboratory [Lemont]
107 University of Chicago
108 Department of Mathematics [Berkeley]
Thierry Cariou
Viggó Marteinsson
  • Fonction : Auteur
Eyjolfur Reynisson
  • Fonction : Auteur
Lise Ovreas
  • Fonction : Auteur
Michael M Yakimov
  • Fonction : Auteur
Takashi Yoshida
  • Fonction : Auteur
Hiroyuki Ogata
Naiara Rodriguez-Ezpeleta
  • Fonction : Auteur
Daniel Vaulot
Stéphane L'Haridon
Patrick Martin
Adriana Zingone
Monia El Bour
  • Fonction : Auteur

Résumé

Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.
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hal-01174095 , version 1 (08-07-2015)

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Anna Kopf, Mesude Bicak, Renzo Kottmann, Julia Schnetzer, Ivaylo Kostadinov, et al.. The ocean sampling day consortium. GigaScience, 2015, 4 (1), pp.27. ⟨10.1186/s13742-015-0066-5⟩. ⟨hal-01174095⟩
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