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labStructName_t : Laboratoire d'océanographie de Villefranche

Modélisation de l'impact des hautes températures sur les microalgues

Nicolas Arsapin
[Internship report] Université du Sud Toulon Var. 2015
Reports hal-01256661v1
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Cascading Effects of Ocean Acidification in a Rocky Subtidal Community

Valentina Asnaghi , Mariachiara Chiantore , Luisa Mangialajo , Frédéric Gazeau , Patrice Francour et al.
PLoS ONE, 2013, 8 (4), pp.e61978. ⟨10.1371/journal.pone.0061978⟩
Journal articles hal-01535594v1

Influence of suspended particle concentration, composition and size on the variability of inherent optical properties of the Southern North Sea

R. Astoreca , D. Doxaran , K. Ruddick , V. Rousseau , C. Lancelot et al.
CONTINENTAL SHELF RESEARCH, 2012, 35, pp.117-128. ⟨10.1016/j.csr.2012.01.007⟩
Journal articles hal-03502678v1

Interannual control of plankton communities by deep winter mixing and prey/predator interactions in the NW Mediterranean: results from a 30-year 3D modeling study

P. A. Auger , C. Ulses , C. Estournel , Lars Stemman , S Somot et al.
Progress in Oceanography, 2014, 124, pp.12-27. ⟨10.1016/j.pocean.2014.04.004⟩
Journal articles hal-00987234v1
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Phytoplankton growth formulation in marine ecosystem models: should we take into account photo-acclimation and variable stoichiometry in oligotrophic areas?

Sakina-Dorothée Ayata , Marina Lévy , Olivier Aumont , Antoine Sciandra , Jacques Sainte-Marie et al.
Journal of Marine Systems, 2013, 125, pp.29-40. ⟨10.1016/j.jmarsys.2012.12.010⟩
Journal articles hal-00820981v2

Comparison of biogeochemical models with increasing complexity in photosynthesis formulation: the importance of taking into account photoadaptation in marine ecosystem models

Sakina-Dorothée Ayata , Olivier Aumont , Olivier Bernard , Marina Lévy
Advances in Marine Ecosystem Modelling Symposium 2011, 2011, Plymouth, United Kingdom
Conference papers hal-00847792v1

Damping effect of flexible phytoplanktonic C:N ratio on primary production at basin-scale

Sakina-Dorothée Ayata , Marina Lévy , Olivier Aumont , Laure Resplandy , Alessandro Tagliabue et al.
EGU General Assembly 2013, Apr 2013, Vienne, Austria. pp.9043
Conference papers hal-00833015v1
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Phytoplankton plasticity drives large variability in carbon fixation efficiency

Sakina-Dorothée Ayata , Marina Lévy , Olivier Aumont , Laure Resplandy , Alessandro Tagliabue et al.
Geophysical Research Letters, 2014, 41 (24), pp.8994-9000. ⟨10.1002/2014gl062249⟩
Journal articles hal-01996384v1

Bloom triggering in the Southern Ocean : Sensitivity to biological parameters

Sakina-Dorothée Ayata , Joan Llort , Alessandro Tagliabue , Marina Lévy
Workshop TANGGO, 2012, Grenoble, France
Conference papers hal-00848378v1
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Regionalisation of the Mediterranean basin, a MERMEX synthesis

Sakina-Dorothée Ayata , Jean-Olivier Irisson , Anais Aubert , L. Berline , Jean-Claude Dutay et al.
Progress in Oceanography, 2017, 163, pp.7 - 20. ⟨10.1016/j.pocean.2017.09.016⟩
Journal articles hal-01629104v1

Modélisation de la croissance du phytoplancton et de la production primaire dans les océans

Sakina-Dorothée Ayata , Marina Lévy , Olivier Aumont , Olivier Bernard
Journée de l'IMREDD, 2012, Nice, France
Conference papers hal-00848379v1

The lipidome associated with the gamma-secretase complex is required for its integrity and activity

Sophie Ayciriex , H. Gerber , M. Osuna , M. Chami , H. Stahlberg et al.
Biochemical Journal, 2016, 473 (3), pp.321 - 334. ⟨10.1042/BJ20150448⟩
Journal articles hal-01779038v1

Cahier thématique : La mer et le littoral de Provence-Alpes-Côte d’Azur face au changement climatique

A Babène , Y Bidet , F Boudouresque , Cécilia Claeys , R David et al.
Les cahiers du GREC-PACA, Association pour l’innovation et la recherche au service du climat (AIR), mars 2017, 2017
Book sections hal-03945859v1

Estimation of primary production in the Arctic Ocean using ocean colour remote sensing and coupled physical-biological models: strengths, limitations and how they compare

Marcel Babin , Simon Bélanger , Ingrid Ellingsen , Alexandre Forest , Vincent Le Fouest et al.
Progress in Oceanography, 2015, 139, pp.197-220. ⟨10.1016/j.pocean.2015.08.008⟩
Journal articles hal-01212709v1

Molecular Phylogeny of Tintinnid Ciliates (Tintinnida, Ciliophora)

Charles Bachy , Fernando Gomez , Purificación López-García , John R. Dolan , David Moreira et al.
Protist, 2012, 163 (6), pp.873-887. ⟨10.1016/j.protis.2012.01.001⟩
Journal articles hal-03502657v1

Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study

Charles Bachy , John R. Dolan , Purificación López-García , Philippe Deschamps , David Moreira et al.
ISME JOURNAL, 2013, 7 (2), pp.244-255. ⟨10.1038/ismej.2012.106⟩
Journal articles hal-03502641v1
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Augmentative biocontrol when natural enemies are subject to Allee effects

Nicolas Bajeux , Frédéric Grognard , Ludovic Mailleret
Journal of Mathematical Biology, 2017, 74 (7), pp.1561 - 1587. ⟨10.1007/s00285-016-1063-8⟩
Journal articles hal-01402250v2

Introduction strategies for biological control agents subject to Allee effects

Nicolas Bajeux , Frédéric Grognard , Ludovic Mailleret
21st International Symposium on Mathematical Theory of Networks and Systems, Jul 2014, Grogningen, Netherlands. 8 p
Conference papers hal-00968180v1

Introduced populations in a stochastic world

Nicolas Bajeux , Frédéric Grognard , Ludovic Mailleret
ECMTB 2016 - European Conference on Mathematical and Theoretical Biology, Jul 2016, Nottingham, United Kingdom
Conference papers hal-01402246v2

Introduced populations in a stochastic world

N. Bajeux , F. Grognard , Ludovic Mailleret , V. Calcagno
Models in population dynamics and ecology, 2016, Marseille, France
Conference papers hal-01402247v1
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Introduced populations in a stochastic world

Nicolas Bajeux , Frédéric Grognard , Ludovic Mailleret , Vincent Calcagno
CMPDE 16 - 10. Models in Population Dynamics and Ecology, Aix Marseille Université (AMU). FRA., Sep 2016, Marseille, France
Conference papers hal-02738988v1

Les stratégies d'introduction d'agents de lutte biologique soumis aux effets Allee

Nicolas Bajeux , Frédéric Grognard , Ludovic Mailleret
34ème Séminaire de la Société Francophone de Biologie Théorique, Société Francophone de Biologie Théorique, May 2014, Saint Flour, France
Conference papers hal-01102298v1
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Modélisation de stratégies d'introduction de populations, effets Allee et stochasticité

Nicolas Bajeux
Autre. Université Côte d'Azur, 2017. Français. ⟨NNT : 2017AZUR4056⟩
Theses tel-01865809v1

Investigation and sensitivity analysis of a mechanistic phytoplankton model implemented in a new modular numerical tool Eco3M dedicated to biogeochemical modelling

Melika Baklouti , Vincent Faure , Lionel Pawlowski , Antoine Sciandra
Progress in Oceanography, 2006, 71 (1), pp.34-58. ⟨10.1016/j.pocean.2006.05.003⟩
Journal articles istex hal-00746680v1
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Cell division, endoreduplication and expansion processes: setting the cell and organ control into an integrated model of tomato fruit development

Valentina Baldazzi , Michel Génard , Nadia Bertin
Acta Horticulturae, 2017, 1182, pp.257 - 264. ⟨10.17660/ActaHortic.2017.1182.31⟩
Journal articles hal-01661920v1

Building an early career network through outreach projects: The "mon océan & moi" example

Marie Barbieux , Carolyn Scheurle , Martina Ferraris , Nicolas Mayot , Orens Pasqueron De Fommervault et al.
Ocean Sciences Meeting, 2016, New Orleans, Louisiana, USA, Unknown Region
Conference papers hal-03971524v1

Proxies of community production derived from the diel variability of particulate attenuation and backscattering coefficients in the northwest Mediterranean Sea

Morvan Barnes , David Antoine
Limnology and Oceanography, 2014, 59 (6), pp.2133-2149. ⟨10.4319/lo.2014.59.6.2133⟩
Journal articles hal-03502755v1

Metabolic modeling of C. sorokiniana diauxic heterotrophic growth

Caroline Baroukh , Olivier Bernard
6. IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE), Oct 2016, Magdeburg, Germany. pp.330-335, ⟨10.1016/j.ifaco1.2016.12.148⟩
Conference papers hal-01602803v1

Metabolic modeling of microalgae growth and lipids production during day/night cycles and nitrogen starvation

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
Metabolic Pathway Analysis 2015, Jun 2015, Braga, Portugal
Conference papers hal-01603450v1
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A new approach to unravel metabolic regulations. Application to microalgae growth and lipid production under day/night cycles and nitrogen starvation

Caroline Baroukh , Olivier Bernard , Jean-Philippe Steyer , Rafael Munoz Tamayo , Benoit Chachuat et al.
BioSynSys 2015 : 1er colloque du GDR "Biologie de Synthèse et des Systèmes", Sep 2015, Paris, France
Conference papers hal-01601441v1

A state of the art of metabolic networks of unicellular microalgae and cyanobacteria for biofuel production

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
Metabolic Engineering, 2015, 30, pp.49-60. ⟨10.1016/j.ymben.2015.03.019⟩
Journal articles hal-01163453v1
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DRUM: A new framework for metabolic modeling under non-balanced growth. Application to the carbon metabolism of unicellular microalgae

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
PLoS ONE, 2014, 9 (8), pp.e104499. ⟨10.1371/journal.pone.0104499⟩
Journal articles hal-01123224v1
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A new framework for metabolic modeling under non-balanced growth. Application to carbon metabolism of unicellular microalgae

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
CAB 2013 - International on Computer Applications to Biotechnology, Dec 2013, Mumbai, India
Conference papers hal-00856042v2

Reply to the Comment on “Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production” by Baroukh et al. [Curr. Opin. Biotechnol. 2015, 33:198–205]

Caroline Baroukh , Rafael Munoz Tamayo , Olivier A. Bernard , Jean-Philippe Steyer
Current Opinion in Biotechnology, 2016, 38, pp.200 - 202. ⟨10.1016/j.copbio.2016.02.018⟩
Journal articles hal-01410975v1
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Dynamic Flux Balance Analysis of the Metabolism of Microalgae under a Diurnal Light Cycle

Caroline Baroukh , Jean Philippe Steyer , Olvier Bernard , Benoit Chachuat
DYCOPS-CAB 2016 - 11th IFAC Symposium on Dynamics and Control of Process Systems, Including Biosystems DYCOPS-CAB 2016, International Federation of Automatic Control (IFAC). AUT., Jun 2016, Trondheim, Norway. pp.791 - 796, ⟨10.1016/j.ifacol.2016.07.285⟩
Conference papers hal-01413531v1

Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production

Caroline Baroukh , Rafael Munoz Tamayo , Olivier Bernard , Jean-Philippe Steyer
Current Opinion in Biotechnology, 2015, 33, pp.198-205. ⟨10.1016/j.copbio.2015.03.002⟩
Journal articles hal-01163456v1

A new framework for metabolic modelling under non-balanced growth. Application to photoautotrophic microalgae in day/night cycle.

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom
Conference papers hal-01601779v1
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Dynamic metabolic modeling of heterotrophic and mixotrophic microalgal growth on fermentative wastes

Caroline Baroukh , Violette Turon , Olivier Bernard
PLoS Computational Biology, 2017, 13 (6), pp.e1005590. ⟨10.1371/journal.pcbi.1005590⟩
Journal articles hal-01576858v1

A new modelling framework: application to microalgae growth

Caroline Baroukh
Young Algaeneers Symposium, 2012, Wageningen, Netherlands
Conference papers hal-00848381v1

Estimation of a Reduced Model of the BSM1 Activated Sludge Wastewater Treatment Plant

O. Barrou , A. Karama , E.K. Lakhal , Olivier Bernard , Marie-Noëlle Pons et al.
International Journal of Chemical Reactor Engineering, 2008, 6, pp.Article A63
Journal articles hal-00372428v1
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Abrupt response of chemical weathering to Late Quaternary hydroclimate changes in northeast Africa

Luc Bastian , Marie Revel , Germain Bayon , Aurélie Dufour , Nathalie Vigier et al.
Scientific Reports, 2017, 7, pp.44231. ⟨10.1038/srep44231⟩
Journal articles hal-01494373v1
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Optimal feeding strategy for the minimal time problem of a fed-batch bioreactor with mortality rate

Térence Bayen , Francis Mairet , Marc Mazade
Optimal Control Applications and Methods, 2015, 36 (1), pp.77-92. ⟨10.1002/oca.2102⟩
Journal articles hal-00759058v2
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Analysis of an optimal control problem connected to bioprocesses involving a saturated singular arc

Térence Bayen , Marc Mazade , Francis Mairet
Discrete and Continuous Dynamical Systems - Series B, 2015, 20 (1), pp.39-58. ⟨10.3934/dcdsb.2015.20.39⟩
Journal articles hal-00879385v2
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Study of a controlled Kolmogorov periodic equation connected to the optimization of periodic bioprocess

Térence Bayen , Francis Mairet , Matthieu Sebbah
[Research Report] INRIA Sophia Antipolis. 2013
Reports hal-00855054v1
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Optimization of strain selection in evolutionary continuous culture

Terence Bayen , Francis Mairet
International Journal of Control, 2016, 90 (12), pp.2748-2759. ⟨10.1080/00207179.2016.1264631⟩
Journal articles hal-01332683v1

Fed-batch bioreactor with mortality rate

Térence Bayen , Francis Mairet , Marc Mazade
9th IFAC Symposium on Nonlinear Control Systems (NOLCOS), Sep 2013, Toulouse, France. pp.158-163, ⟨10.3182/20130904-3-FR-2041.00024⟩
Conference papers hal-00850367v1
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Optimization of the separation of two species in a chemostat

Térence Bayen , Francis Mairet
Automatica, 2014, 50 (4), pp.1243-1248. ⟨10.1016/j.automatica.2014.02.024⟩
Journal articles hal-00817147v2
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Analysis of a periodic optimal control problem connected to microalgae anaerobic digestion

Térence Bayen , Francis Mairet , Pierre Martinon , Matthieu Sebbah
Optimal Control Applications and Methods, 2015, 36 (6), pp.750-773. ⟨10.1002/oca.2127⟩
Journal articles hal-00860570v1
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Minimal time problem for a fed-batch bioreactor with a non admissible singular arc

Térence Bayen , Francis Mairet , Marc Mazade
European Control Conference (ECC), Université de Strasbourg (Unistra). Strasbourg, FRA. IEEE Control Systems Society., Jun 2014, Strasbourg, France. pp.165-170, ⟨10.1109/ECC.2014.6862444⟩
Conference papers hal-01095694v1
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Tropical microalgae isolated on Reunion island (France, Indian ocean) as sources of antifouling molecules: the BIOPAINTROP project

Alexis Bazire , Yves Blache , Laurent Blériot , Christine Bressy , Jean Briand et al.
18th International Congress on Marine Corrosion and Fouling, Jun 2016, Toulon, France. 2016
Conference poster hal-01391798v1