L. Fleche, P. Hauck, Y. Onteniente, L. Prieur, A. Denoeud et al., A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis, BMC Microbiol, vol.1, issue.2, 2001.
URL : https://hal.archives-ouvertes.fr/hal-01158341

C. Bayliss, D. Field, and E. Moxon, The simple sequence contingency loci of Haemophilus influenzae and Neisseria meningitidis, Journal of Clinical Investigation, vol.107, issue.6, pp.657-666, 2001.
DOI : 10.1172/JCI12557

P. Hermans, D. Van-soolingen, E. Bik, P. De-haas, J. Dale et al., Insertion element IS987 from Mycobacterium bovis BCG is located in a hot-spot integration region for insertion elements in Mycobacterium tuberculosis complex strains Genetic variation and evolutionary origin of the direct repeat locus of Mycobacterium tuberculosis complex bacteria, Infect Immun J Bacteriol, vol.59, issue.182, pp.2695-27052393, 1991.

C. Sola, I. Filliol, M. Gutierrez, I. Mokrousov, V. Vincent et al., Spoligotype Database of Mycobacterium tuberculosis: Biogeographic Distribution of Shared Types and Epidemiologic and Phylogenetic Perspectives, Emerging Infectious Diseases, vol.7, issue.3, pp.390-396, 2001.
DOI : 10.3201/eid0703.010304

K. Kremer, D. Van-soolingen, R. Frothingham, W. Haas, P. Hermans et al., Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility, J Clin Microbiol, vol.37, pp.2607-2618, 1999.

R. Frothingham and W. Meeker-o-'connell, Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats, Microbiology, vol.144, issue.5, pp.1189-1196, 1998.
DOI : 10.1099/00221287-144-5-1189

P. Supply, E. Mazars, S. Lesjean, V. Vincent, B. Gicquel et al., Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome, Molecular Microbiology, vol.59, issue.3, pp.762-771, 2000.
DOI : 10.1046/j.1365-2958.2000.01905.x

S. Roring, A. Scott, D. Brittain, I. Walker, G. Hewinson et al., Development of Variable-Number Tandem Repeat Typing of Mycobacterium bovis: Comparison of Results with Those Obtained by Using Existing Exact Tandem Repeats and Spoligotyping, Journal of Clinical Microbiology, vol.40, issue.6, pp.2126-2133, 2002.
DOI : 10.1128/JCM.40.6.2126-2133.2002

E. Mazars, S. Lesjean, A. Banuls, M. Gilbert, V. Vincent et al., High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology, Proceedings of the National Academy of Sciences, vol.98, issue.4, pp.1901-1906, 2001.
DOI : 10.1073/pnas.98.4.1901

R. Skuce, T. Mccorry, J. Mccarroll, S. Roring, A. Scott et al., Discrimination of Mycobacterium tuberculosis complex bacteria using novel VNTR-PCR targets, Microbiology, vol.148, issue.2, pp.519-528, 2002.
DOI : 10.1099/00221287-148-2-519

P. Supply, S. Lesjean, E. Savine, K. Kremer, D. Van-soolingen et al., Automated High-Throughput Genotyping for Study of Global Epidemiology of Mycobacterium tuberculosis Based on Mycobacterial Interspersed Repetitive Units, Journal of Clinical Microbiology, vol.39, issue.10, pp.3563-3571, 2001.
DOI : 10.1128/JCM.39.10.3563-3571.2001

B. Ross, K. Raios, K. Jackson, and B. Dwyer, Molecular cloning of a highly repeated DNA element from Mycobacterium tuberculosis and its use as an epidemiological tool, J Clin Microbiol, vol.30, pp.942-946, 1992.

D. Van-soolingen, L. Qian, P. De-haas, J. Douglas, H. Traore et al., Predominance of a single genotype of Mycobacterium tuberculosis in countries of east Asia, J Clin Microbiol, vol.33, pp.3234-3238, 1995.

C. Collins, M. Yates, and J. Grange, SUMMARY, Journal of Hygiene, vol.108, issue.02, pp.235-242, 1982.
DOI : 10.1099/00207713-28-4-464

URL : https://hal.archives-ouvertes.fr/hal-01407396

W. Haas, G. Bretzel, B. Amthor, K. Schilke, G. Krommes et al., Comparison of DNA fingerprint patterns of isolates of Mycobacterium africanum from east and west Africa, J Clin Microbiol, vol.35, pp.663-666, 1997.

R. Frothingham, P. Strickland, G. Bretzel, S. Ramaswamy, J. Musser et al., Phenotypic and genotypic characterization of Mycobacterium africanum isolates from West Africa, J Clin Microbiol, vol.37, pp.1921-1926, 1999.

C. Viana-niero, C. Gutierrez, C. Sola, I. Filliol, F. Boulahbal et al., Genetic Diversity of Mycobacterium africanum Clinical Isolates Based on IS6110-Restriction Fragment Length Polymorphism Analysis, Spoligotyping, and Variable Number of Tandem DNA Repeats, Journal of Clinical Microbiology, vol.39, issue.1, pp.57-65, 2001.
DOI : 10.1128/JCM.39.1.57-65.2001

R. Fleischmann, D. Alland, J. Eisen, L. Carpenter, O. White et al., Whole-Genome Comparison of Mycobacterium tuberculosis Clinical and Laboratory Strains, Journal of Bacteriology, vol.184, issue.19, pp.5479-5490, 2002.
DOI : 10.1128/JB.184.19.5479-5490.2002

S. Sampson, P. Lukey, R. Warren, P. Van-helden, M. Richardson et al., Expression, characterization and subcellular localization of the Mycobacterium tuberculosis PPE gene Rv1917c, Tuberculosis, vol.81, issue.5-6, pp.305-317, 2001.
DOI : 10.1054/tube.2001.0304

H. David, M. Jahan, A. Jumin, J. Grandry, and E. Lehmann, Numerical taxonomy of Mycobacterium africanum, Int J Syst Bacteriol, vol.28, pp.467-472, 1978.

R. Brosch, S. Gordon, M. Marmiesse, P. Brodin, C. Buchrieser et al., complex, Proceedings of the National Academy of Sciences, vol.99, issue.6, pp.3684-3689, 2002.
DOI : 10.1073/pnas.052548299

V. Levy-frebault and F. Portaels, Proposed Minimal Standards for the Genus Mycobacterium and for Description of New Slowly Growing Mycobacterium Species, International Journal of Systematic Bacteriology, vol.42, issue.2, pp.315-323, 1992.
DOI : 10.1099/00207713-42-2-315

S. Cole, R. Brosch, J. Parkhill, T. Garnier, C. Churcher et al., Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence, Nature, vol.25, issue.6685, pp.537-544, 1998.
DOI : 10.1038/31159

G. Benson, Tandem repeats finder: a program to analyze DNA sequences, Nucleic Acids Research, vol.27, issue.2, pp.573-580, 1999.
DOI : 10.1093/nar/27.2.573